Lecture 1: Course Introduction (ETH-GENOMICS)
35:46Lecture 2: Introduction to Genome Analysis (ETH-GENOMICS)
55:39Lecture 3: From Molecules to Data: An Overview of DNA Sequencing Technologies (ETH-GENOMICS)
50:00Lecture 4: Fundamentals of Sequence Search and Alignment (ETH-GENOMICS)
1:04:09Lecture 5: Building the Blueprint of Life: Genome Assembly (ETH-GENOMICS)
47:32Lecture 6a: GateKeeper (ETH-GENOMICS)
59:28Lecture 6b: SneakySnake (ETH-GENOMICS)
44:51Lecture 6c: GRIM-Filter (ETH-GENOMICS)
24:50Lecture 7a: GenASM (ETH-GENOMICS)
35:00Lecture 7b: Scrooge (ETH-GENOMICS)
15:05Lecture 7c: SeGraM (ETH-GENOMICS)
50:23Lecture 8a: GenStore (ETH-GENOMICS)
34:19Lecture 8b: MegIS (ETH-GENOMICS)
27:46Lecture 9a: GenPIP (ETH-GENOMICS)
27:27Lecture 9b: TargetCall (ETH-GENOMICS)
21:38Lecture 10a: BLEND (ETH-GENOMICS)
56:07Lecture 10b: AirLift (ETH-GENOMICS)
25:59Lecture 7c: SeGraM (ETH-GENOMICS)
The lecture introduces SeGraM, a hardware accelerator designed to significantly speed up genome-wide k-mer counting, a critical step in many bioinformatics pipelines.
Project & Seminar (P&S), ETH Zürich, Spring 2025
Algorithm and Architecture Design for Genomics (https://safari.ethz.ch/projects_and_seminars/spring2025/doku.php?id=genome_seq_mobile)
Accelerating Genome Analysis (https://safari.ethz.ch/projects_and_seminars/spring2025/doku.php?id=bioinformatics)
Lecture 7b: Scrooge (ETH-GENOMICS)
Next · Lecture 12Lecture 8a: GenStore (ETH-GENOMICS)
Seminar notes & discussion
No public seminar notes on this lecture yet.